Package: SurvivalClusteringTree
Type: Package
Title: Clustering Analysis Using Survival Tree and Forest Algorithms
Version: 1.0
Date: 2023-07-10
Authors@R: c(person(
    given="Lu",
    family="You",
    role=c("aut","cre"),
    email="lu.you@epi.usf.edu",
    comment="Created the package. Maintains the package."),
  person(
    given="Lauric",
    family="Ferrat",
    role=c("aut"),
    email="l.a.ferrat@exeter.ac.uk",
    comment="Added functionality. Revised the package. Wrote the vignette."),
  person(
    given="Hemang",
    family="Parikh",
    role=c("aut"),
    email="hemang.parikh@epi.usf.edu",
    comment="Checked and revised the package."),
  person(
    given="Yanan",
    family="Huo",
    role=c("aut"),
    email="yananhoho@gmail.com",
    comment="Revised plotting functions of the package."),
  person(
    given="Jeffrey",
    family="Krischer",
    role=c("ctb"),
    comment="Supervisor the medical research. Coauthor of the medical manuscript."),
  person(
    given="Maria",
    family="Redondo",
    role=c("ctb"),
    comment="Principal investigators of the medical research. Coauthor of the medical manuscript."),
  person(
    given="Richard",
    family="Oram",
    role=c("ctb"),
    comment="Coauthor of the medical manuscript."),
  person(
    given="Andrea",
    family="Steck",
    role=c("ctb"),
    comment="Coauthor of the medical manuscript."))
Maintainer: Lu You <lu.you@epi.usf.edu>
Description: An outcome-guided algorithm is developed to identify
        clusters of samples with similar characteristics and survival
        rate. The algorithm first builds a random forest and then
        defines distances between samples based on the fitted random
        forest. Given the distances, we can apply hierarchical
        clustering algorithms to define clusters.
License: GPL (>= 2)
Suggests: knitr, rmarkdown, tinytest
Encoding: UTF-8
RoxygenNote: 7.1.2
Imports: Rcpp, survival, dplyr, grid, gridtext, formula.tools
LinkingTo: Rcpp, RcppArmadillo
VignetteBuilder: knitr
Config/pak/sysreqs: libicu-dev libjpeg-dev libpng-dev libxml2-dev
        libssl-dev
Repository: https://luyouepiusf.r-universe.dev
Date/Publication: 2023-07-30 19:30:40 UTC
RemoteUrl: https://github.com/luyouepiusf/survivalclusteringtree
RemoteRef: HEAD
RemoteSha: 621fb090ed78983d9193a70835bed10038462aeb
NeedsCompilation: yes
Packaged: 2026-06-05 08:36:52 UTC; root
Author: Lu You [aut, cre] (Created the package. Maintains the package.),
  Lauric Ferrat [aut] (Added functionality. Revised the package. Wrote
    the vignette.),
  Hemang Parikh [aut] (Checked and revised the package.),
  Yanan Huo [aut] (Revised plotting functions of the package.),
  Jeffrey Krischer [ctb] (Supervisor the medical research. Coauthor of
    the medical manuscript.),
  Maria Redondo [ctb] (Principal investigators of the medical research.
    Coauthor of the medical manuscript.),
  Richard Oram [ctb] (Coauthor of the medical manuscript.),
  Andrea Steck [ctb] (Coauthor of the medical manuscript.)